Bias analysis SHAP analysis Computer vision (CV) explainability analysis Partial dependence plots (PDPs) analysis

Analysis Results

After a SageMaker Clarify processing job is finished, you can download the output files to inspect them, or you can visualize the results in SageMaker Studio Classic. The following topic describes the analysis results that SageMaker Clarify generates, such as the schema and the report that's generated by bias analysis, SHAP analysis, computer vision explainability analysis, and partial dependence plots (PDPs) analysis. If the configuration analysis contains parameters to compute multiple analyses, then the results are aggregated into one analysis and one report file.

The SageMaker Clarify processing job output directory contains the following files:

analysis.json – A file that contains bias metrics and feature importance in JSON format.
report.ipynb – A static notebook that contains code to help you visualize bias metrics and feature importance.
explanations_shap/out.csv – A directory that is created and contains automatically generated files based on your specific analysis configurations. For example, if you activate the save_local_shap_values parameter, then per-instance local SHAP values will be saved to the explanations_shap directory. As another example, if your analysis configuration does not contain a value for the SHAP baseline parameter, the SageMaker Clarify explainability job computes a baseline by clustering the input dataset. It then saves the generated baseline to the directory.

For more detailed information, see the following sections.

Topics

Bias analysis
SHAP analysis
Computer vision (CV) explainability analysis
Partial dependence plots (PDPs) analysis

Bias analysis

Amazon SageMaker Clarify uses the terminology documented in Amazon SageMaker Clarify Terms for Bias and Fairness to discuss bias and fairness.

Schema for the analysis file

The analysis file is in JSON format and is organized into two sections: pre-training bias metrics and post-training bias metrics. The parameters for pre-training and post-training bias metrics are as follows.

pre_training_bias_metrics – Parameters for pre-training bias metrics. For more information, see Pre-training Bias Metrics and Analysis Configuration Files.
- label – The ground truth label name defined by the label parameter of the analysis configuration.
- label_value_or_threshold – A string containing the label values or interval defined by the label_values_or_threshold parameter of the analysis configuration. For example, if value 1 is provided for binary classification problem, then the string will be 1. If multiple values [1,2] are provided for multi-class problem, then the string will be 1,2. If a threshold 40 is provided for regression problem, then the string will be an internal like (40, 68] in which 68 is the maximum value of the label in the input dataset.
- facets – The section contains several key-value pairs, where the key corresponds to the facet name defined by the name_or_index parameter of the facet configuration, and the value is an array of facet objects. Each facet object has the following members:
  - value_or_threshold – A string containing the facet values or interval defined by the value_or_threshold parameter of the facet configuration.
  - metrics – The section contains an array of bias metric elements, and each bias metric element has the following attributes:
    
    name – The short name of the bias metric. For example, CI.
    
    description – The full name of the bias metric. For example, Class Imbalance (CI).
    
    value – The bias metric value, or JSON null value if the bias metric is not computed for a particular reason. The values ±∞ are represented as strings ∞ and -∞ respectively.
    
    error – An optional error message that explains why the bias metric was not computed.
post_training_bias_metrics – The section contains the post-training bias metrics and it follows a similar layout and structure to the pre-training section. For more information, see Post-training Data and Model Bias Metrics.

The following is an example of an analysis configuration that will calculate both pre-training and post-training bias metrics.


{
    "version": "1.0",
    "pre_training_bias_metrics": {
        "label": "Target",
        "label_value_or_threshold": "1",
        "facets": {
            "Gender": [{
                "value_or_threshold": "0",
                "metrics": [
                    {
                        "name": "CDDL",
                        "description": "Conditional Demographic Disparity in Labels (CDDL)",
                        "value": -0.06
                    },
                    {
                        "name": "CI",
                        "description": "Class Imbalance (CI)",
                        "value": 0.6
                    },
                    ...
                ]
            }]
        }
    },
    "post_training_bias_metrics": {
        "label": "Target",
        "label_value_or_threshold": "1",
        "facets": {
            "Gender": [{
                "value_or_threshold": "0",
                "metrics": [
                    {
                        "name": "AD",
                        "description": "Accuracy Difference (AD)",
                        "value": -0.13
                    },
                    {
                        "name": "CDDPL",
                        "description": "Conditional Demographic Disparity in Predicted Labels (CDDPL)",
                        "value": 0.04
                    },
                    ...
                ]
            }]
        }
    }
}

Bias analysis report

The bias analysis report includes several tables and diagrams that contain detailed explanations and descriptions. These include, but are not limited to, the distribution of label values, the distribution of facet values, high-level model performance diagram, a table of bias metrics, and their descriptions. For more information about bias metrics and how to interpret them, see the Learn How Amazon SageMaker Clarify Helps Detect Bias.

SHAP analysis

SageMaker Clarify processing jobs use the Kernel SHAP algorithm to compute feature attributions. The SageMaker Clarify processing job produces both local and global SHAP values. These help to determine the contribution of each feature towards model predictions. Local SHAP values represent the feature importance for each individual instance, while global SHAP values aggregate the local SHAP values across all instances in the dataset. For more information about SHAP values and how to interpret them, see Feature Attributions that Use Shapley Values.

Schema for the SHAP analysis file

Global SHAP analysis results are stored in the explanations section of the analysis file, under the kernel_shap method. The different parameters of the SHAP analysis file are as follows:

explanations – The section of the analysis file that contains the feature importance analysis results.
- kernal_shap – The section of the analysis file that contains the global SHAP analysis result.
  - global_shap_values – A section of the analysis file that contains several key-value pairs. Each key in the key-value pair represents a feature name from the input dataset. Each value in the key-value pair corresponds to the feature's global SHAP value. The global SHAP value is obtained by aggregating the per-instance SHAP values of the feature using the agg_method configuration. If the use_logit configuration is activated, then the value is calculated using the logistic regression coefficients, which can be interpreted as log-odds ratios.
  - expected_value – The mean prediction of the baseline dataset. If the use_logit configuration is activated, then the value is calculated using the logistic regression coefficients.
  - global_top_shap_text – Used for NLP explainability analysis. A section of the analysis file that includes a set of key-value pairs. SageMaker Clarify processing jobs aggregate the SHAP values of each token and then select the top tokens based on their global SHAP values. The max_top_tokens configuration defines the number of tokens to be selected.
    
    Each of the selected top tokens has a key-value pair. The key in the key-value pair corresponds to a top token’s text feature name. Each value in the key-value pair is the global SHAP values of the top token. For an example of a global_top_shap_text key-value pair, see the following output.

The following example shows output from the SHAP analysis of a tabular dataset.


{
    "version": "1.0",
    "explanations": {
        "kernel_shap": {
            "Target": {
                 "global_shap_values": {
                    "Age": 0.022486410860333206,
                    "Gender": 0.007381025261958729,
                    "Income": 0.006843906804137847,
                    "Occupation": 0.006843906804137847,
                    ...
                },
                "expected_value": 0.508233428001
            }
        }
    }
}

The following example shows output from the SHAP analysis of a text dataset. The output corresponding to the column Comments is an example of output that is generated after analysis of a text feature.


{
    "version": "1.0",
    "explanations": {
        "kernel_shap": {
            "Target": {
               "global_shap_values": {
                    "Rating": 0.022486410860333206,
                    "Comments": 0.058612104851485144,
                    ...
                },
                "expected_value": 0.46700941970297033,
                "global_top_shap_text": {
                    "charming": 0.04127962903247833,
                    "brilliant": 0.02450240786522321,
                    "enjoyable": 0.024093569652715457,
                    ...
                }
            }
        }
    }
}

Schema for the generated baseline file

When a SHAP baseline configuration is not provided, the SageMaker Clarify processing job generates a baseline dataset. SageMaker Clarify uses a distance-based clustering algorithm to generate a baseline dataset from clusters created from the input dataset. The resulting baseline dataset is saved in a CSV file, located at explanations_shap/baseline.csv. This output file contains a header row and several instances based on the num_clusters parameter that is specified in the analysis configuration. The baseline dataset only consists of feature columns. The following example shows a baseline created by clustering the input dataset.


Age,Gender,Income,Occupation
35,0,2883,1
40,1,6178,2
42,0,4621,0

Schema for local SHAP values from tabular dataset explainability analysis

For tabular datasets, if a single compute instance is used, the SageMaker Clarify processing job saves the local SHAP values to a CSV file named explanations_shap/out.csv. If you use multiple compute instances, local SHAP values are saved to several CSV files in the explanations_shap directory.

An output file containing local SHAP values has a row containing the local SHAP values for each column that is defined by the headers. The headers follow the naming convention of Feature_Label where the feature name is appended by an underscore, followed by the name of the your target variable.

For multi-class problems, the feature names in the header vary first, then labels. For example, two features F1, F2, and two classes L1 and L2, in headers are F1_L1, F2_L1, F1_L2, and F2_L2. If the analysis configuration contains a value for the joinsource_name_or_index parameter, then the key column used in the join is appended to the end of the header name. This allows mapping of the local SHAP values to instances of the input dataset. An example of an output file containing SHAP values follows.


Age_Target,Gender_Target,Income_Target,Occupation_Target
0.003937908,0.001388849,0.00242389,0.00274234
-0.0052784,0.017144491,0.004480645,-0.017144491
...

Schema for local SHAP values from NLP explainability analysis

For NLP explainability analysis, if a single compute instance is used, the SageMaker Clarify processing job saves local SHAP values to a JSON Lines file named explanations_shap/out.jsonl. If you use multiple compute instances, the local SHAP values are saved to several JSON Lines files in the explanations_shap directory.

Each file containing local SHAP values has several data lines, and each line is a valid JSON object. The JSON object has the following attributes:

explanations – The section of the analysis file that contains an array of Kernel SHAP explanations for a single instance. Each element in the array has the following members:
- feature_name – The header name of the features provided by the headers configuration.
- data_type – The feature type inferred by the SageMaker Clarify processing job. Valid values for text features include numerical, categorical, and free_text (for text features).
- attributions – A feature-specific array of attribution objects. A text feature can have multiple attribution objects, each for a unit defined by the granularity configuration. The attribution object has the following members:
  - attribution – A class-specific array of probability values.
  - description – (For text features) The description of the text units.
    
    partial_text – The portion of the text explained by the SageMaker Clarify processing job.
    
    start_idx – A zero-based index to identify the array location indicating the beginning of the partial text fragment.

The following is an example of a single line from a local SHAP values file, beautified to enhance its readability.


{
    "explanations": [
        {
            "feature_name": "Rating",
            "data_type": "categorical",
            "attributions": [
                {
                    "attribution": [0.00342270632248735]
                }
            ]
        },
        {
            "feature_name": "Comments",
            "data_type": "free_text",
            "attributions": [
                {
                    "attribution": [0.005260534499999983],
                    "description": {
                        "partial_text": "It's",
                        "start_idx": 0
                    }
                },
                {
                    "attribution": [0.00424190349999996],
                    "description": {
                        "partial_text": "a",
                        "start_idx": 5
                    }
                },
                {
                    "attribution": [0.010247314500000014],
                    "description": {
                        "partial_text": "good",
                        "start_idx": 6
                    }
                },
                {
                    "attribution": [0.006148907500000005],
                    "description": {
                        "partial_text": "product",
                        "start_idx": 10
                    }
                }
            ]
        }
    ]
}

SHAP analysis report

The SHAP analysis report provides a bar chart of a maximum of 10 top global SHAP values. The following chart example shows the SHAP values for the top 4 features.

Horizontal bar chart of global SHAP values calculated for target variable of the top four features.

Computer vision (CV) explainability analysis

SageMaker Clarify computer vision explainability takes a dataset consisting of images and treats each image as a collection of super pixels. After analysis, the SageMaker Clarify processing job outputs a dataset of images where each image shows the heat map of the super pixels.

The following example shows an input speed limit sign on the left and a heat map shows the magnitude of SHAP values on the right. These SHAP values were calculated by an image recognition Resnet-18 model that is trained to recognize German traffic signs. The German Traffic Sign Recognition Benchmark (GTSRB) dataset is provided in the paper Man vs. computer: Benchmarking machine learning algorithms for traffic sign recognition. In the example output, large positive values indicate that the super pixel has a strong positive correlation with the model prediction. Large negative values indicate that the super pixel has a strong negative correlation with the model prediction. The larger the absolute value of the SHAP value shown in the heat map, the stronger the relationship between the super pixel and model prediction.

Input image of speed limit sign and resulting heat map of SHAP values from a Resnet-18 model.

For more information, see the sample notebooks Explaining Image Classification with SageMaker Clarify and Explaining object detection models with Amazon SageMaker Clarify.

Partial dependence plots (PDPs) analysis

Partial dependence plots show the dependence of the predicted target response on a set of input features of interest. These are marginalized over the values of all other input features and are referred to as the complement features. Intuitively, you can interpret the partial dependence as the target response, which is expected as a function of each input feature of interest.

Schema for the analysis file

The PDP values are stored in the explanations section of the analysis file under the pdp method. The parameters for explanations are as follows:

explanations – The section of the analysis files that contains feature importance analysis results.
- pdp – The section of the analysis file that contains an array of PDP explanations for a single instance. Each element of the array has the following members:
  - feature_name – The header name of the features provided by the headers configuration.
  - data_type – The feature type inferred by the SageMaker Clarify processing job. Valid values for data_type include numerical and categorical.
  - feature_values – Contains the values present in the feature. If the data_type inferred by SageMaker Clarify is categorical, feature_values contains all of the unique values that the feature could be. If the data_type inferred by SageMaker Clarify is numerical, feature_values contains a list of the central value of generated buckets. The grid_resolution parameter determines the number of buckets used to group the feature column values.
  - data_distribution – An array of percentages, where each value is the percentage of instances that a bucket contains. The grid_resolution parameter determines the number of buckets. The feature column values are grouped into these buckets.
  - model_predictions – An array of model predictions, where each element of the array is an array of predictions that corresponds to one class in the model’s output.
    
    label_headers – The label headers provided by the label_headers configuration.
  - error – An error message generated if the PDP values are not computed for a particular reason. This error message replaces the content contained in the feature_values, data_distributions, and model_predictions fields.

The following is example output from an analysis file containing a PDP analysis result.


{
    "version": "1.0",
    "explanations": {
        "pdp": [
            {
                "feature_name": "Income",
                "data_type": "numerical",
                "feature_values": [1046.9, 2454.7, 3862.5, 5270.2, 6678.0, 8085.9, 9493.6, 10901.5, 12309.3, 13717.1],
                "data_distribution": [0.32, 0.27, 0.17, 0.1, 0.045, 0.05, 0.01, 0.015, 0.01, 0.01],
                "model_predictions": [[0.69, 0.82, 0.82, 0.77, 0.77, 0.46, 0.46, 0.45, 0.41, 0.41]],
                "label_headers": ["Target"]
            },
            ...
        ]
    }
}

PDP analysis report

You can generate an analysis report containing a PDP chart for each feature. The PDP chart plots feature_values along the x-axis, and it plots model_predictions along the y-axis. For multi-class models, model_predictions is an array, and each element of this array corresponds to one of the model prediction classes.

The following is an example of PDP chart for the feature Age. In the example output, the PDP shows the number of feature values that are grouped into buckets. The number of buckets is determined by grid_resolution. The buckets of feature values are plotted against model predictions. In this example, the higher feature values have the same model prediction values.

Line chart showing how model predictions vary against feature_values for 10 unique grid points.

Javascript is disabled or is unavailable in your browser.

To use the Amazon Web Services Documentation, Javascript must be enabled. Please refer to your browser's Help pages for instructions.

Run SageMaker Clarify Processing Jobs

Troubleshoot Jobs