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Amazon Boto3

Amazon SageMaker Debugger built-in rules can be configured for a training job using the create_training_job() function of the Amazon Boto3 SageMaker client. You need to specify the right image URI in the RuleEvaluatorImage parameter, and the following examples walk you through how to set up the request body for the create_training_job() function.

The following code shows a complete example of how to configure Debugger for the create_training_job() request body and start a training job in us-west-2, assuming that a training script entry_point/train.py is prepared using TensorFlow. To find an end-to-end example notebook, see Profiling TensorFlow Multi GPU Multi Node Training Job with Amazon SageMaker Debugger (Boto3).

import sagemaker, boto3
import datetime, tarfile

# Start setting up a SageMaker session and a Boto3 SageMaker client
session = sagemaker.Session()
region = session.boto_region_name
bucket = session.default_bucket()

# Upload a training script to a default Amazon S3 bucket of the current SageMaker session
source = 'source.tar.gz'
project = 'debugger-boto3-test'

tar = tarfile.open(source, 'w:gz')
tar.add ('entry_point/train.py') # Specify the directory and name of your training script
tar.close()

s3 = boto3.client('s3')
s3.upload_file(source, bucket, project+'/'+source)

# Set up a Boto3 session client for SageMaker
sm = boto3.Session(region_name=region).client("sagemaker")

# Start a training job
sm.create_training_job(
    TrainingJobName='debugger-boto3-'+datetime.datetime.now().strftime('%Y-%m-%d-%H-%M-%S'),
    HyperParameters={
        'sagemaker_submit_directory': 's3://'+bucket+'/'+project+'/'+source,
        'sagemaker_program': '/entry_point/train.py' # training scrip file location and name under the sagemaker_submit_directory
    },
    AlgorithmSpecification={
        # Specify a training Docker container image URI (Deep Learning Container or your own training container) to TrainingImage.
        'TrainingImage': '763104351884.dkr.ecr.us-west-2.amazonaws.com/tensorflow-training:2.4.1-gpu-py37-cu110-ubuntu18.04',
        'TrainingInputMode': 'File',
        'EnableSageMakerMetricsTimeSeries': False
    },
    RoleArn='arn:aws:iam::111122223333:role/service-role/AmazonSageMaker-ExecutionRole-20201014T161125',
    OutputDataConfig={'S3OutputPath': 's3://'+bucket+'/'+project+'/output'},
    ResourceConfig={
        'InstanceType': 'ml.p3.8xlarge',
        'InstanceCount': 1,
        'VolumeSizeInGB': 30
    },
    StoppingCondition={
        'MaxRuntimeInSeconds': 86400
    },
    DebugHookConfig={
        'S3OutputPath': 's3://'+bucket+'/'+project+'/debug-output',
        'CollectionConfigurations': [
            {
                'CollectionName': 'losses',
                'CollectionParameters' : {
                    'train.save_interval': '500',
                    'eval.save_interval': '50'
                }
            }
        ]
    },
    DebugRuleConfigurations=[
        {
            'RuleConfigurationName': 'LossNotDecreasing',
            'RuleEvaluatorImage': '895741380848.dkr.ecr.us-west-2.amazonaws.com/sagemaker-debugger-rules:latest',
            'RuleParameters': {'rule_to_invoke': 'LossNotDecreasing'}
        }
    ],
    ProfilerConfig={
        'S3OutputPath': 's3://'+bucket+'/'+project+'/profiler-output',
        'ProfilingIntervalInMilliseconds': 500,
        'ProfilingParameters': {
            'DataloaderProfilingConfig': '{"StartStep": 5, "NumSteps": 3, "MetricsRegex": ".*", }',
            'DetailedProfilingConfig': '{"StartStep": 5, "NumSteps": 3, }',
            'PythonProfilingConfig': '{"StartStep": 5, "NumSteps": 3, "ProfilerName": "cprofile", "cProfileTimer": "total_time"}',
            'LocalPath': '/opt/ml/output/profiler/' # Optional. Local path for profiling outputs
        }
    },
    ProfilerRuleConfigurations=[
        {
            'RuleConfigurationName': 'ProfilerReport',
            'RuleEvaluatorImage': '895741380848.dkr.ecr.us-west-2.amazonaws.com/sagemaker-debugger-rules:latest',
            'RuleParameters': {'rule_to_invoke': 'ProfilerReport'}
        }
    ]
)

To configure a Debugger rule for debugging model parameters

The following code samples show how to configure a built-in VanishingGradient rule using this SageMaker API.

To enable Debugger to collect output tensors

Specify the Debugger hook configuration as follows:

DebugHookConfig={
    'S3OutputPath': 's3://<default-bucket>/<training-job-name>/debug-output',
    'CollectionConfigurations': [
        {
            'CollectionName': 'gradients',
            'CollectionParameters' : {
                'train.save_interval': '500',
                'eval.save_interval': '50'
            }
        }
    ]
}

This will make the training job save a tensor collection, gradients, every save_interval of 500 steps. To find available CollectionName values, see Debugger Built-in Collections in the SMDebug client library documentation. To find available CollectionParameters parameter keys and values, see the sagemaker.debugger.CollectionConfig class in the SageMaker Python SDK documentation.

To enable Debugger rules for debugging the output tensors

The following DebugRuleConfigurations API example shows how to run the built-in VanishingGradient rule on the saved gradients collection.

DebugRuleConfigurations=[
    {
        'RuleConfigurationName': 'VanishingGradient',
        'RuleEvaluatorImage': '895741380848.dkr.ecr.us-west-2.amazonaws.com/sagemaker-debugger-rules:latest',
        'RuleParameters': {
            'rule_to_invoke': 'VanishingGradient',
            'threshold': '20.0'
        }
    }
]

With a configuration like the one in this sample, Debugger starts a rule evaluation job for your training job using the VanishingGradient rule on the collection of gradients tensor. To find a complete list of available Docker images for using the Debugger rules, see Use Debugger Docker Images for Built-in or Custom Rules. To find the key-value pairs for RuleParameters, see List of Debugger Built-in Rules.

To configure a Debugger built-in rule for profiling system and framework metrics

The following example code shows how to specify the ProfilerConfig API operation to enable collecting system and framework metrics.

To enable Debugger profiling to collect system and framework metrics

Target Step

ProfilerConfig={ 
    'S3OutputPath': 's3://<default-bucket>/<training-job-name>/profiler-output', # Optional. Path to an S3 bucket to save profiling outputs
    # Available values for ProfilingIntervalInMilliseconds: 100, 200, 500, 1000 (1 second), 5000 (5 seconds), and 60000 (1 minute) milliseconds.
    'ProfilingIntervalInMilliseconds': 500, 
    'ProfilingParameters': {
        'DataloaderProfilingConfig': '{
            "StartStep": 5, 
            "NumSteps": 3, 
            "MetricsRegex": ".*"
        }',
        'DetailedProfilingConfig': '{
            "StartStep": 5, 
            "NumSteps": 3 
        }',
        'PythonProfilingConfig': '{
            "StartStep": 5, 
            "NumSteps": 3, 
            "ProfilerName": "cprofile",  # Available options: cprofile, pyinstrument
            "cProfileTimer": "total_time"  # Include only when using cprofile. Available options: cpu, off_cpu, total_time
        }',
        'LocalPath': '/opt/ml/output/profiler/' # Optional. Local path for profiling outputs
    }
}

Target Time Duration

ProfilerConfig={ 
    'S3OutputPath': 's3://<default-bucket>/<training-job-name>/profiler-output', # Optional. Path to an S3 bucket to save profiling outputs
    # Available values for ProfilingIntervalInMilliseconds: 100, 200, 500, 1000 (1 second), 5000 (5 seconds), and 60000 (1 minute) milliseconds.
    'ProfilingIntervalInMilliseconds': 500,
    'ProfilingParameters': {
        'DataloaderProfilingConfig': '{
            "StartTimeInSecSinceEpoch": 12345567789, 
            "DurationInSeconds": 10, 
            "MetricsRegex": ".*"
        }',
        'DetailedProfilingConfig': '{
            "StartTimeInSecSinceEpoch": 12345567789, 
            "DurationInSeconds": 10
        }',
        'PythonProfilingConfig': '{
            "StartTimeInSecSinceEpoch": 12345567789, 
            "DurationInSeconds": 10, 
            "ProfilerName": "cprofile",  # Available options: cprofile, pyinstrument
            "cProfileTimer": "total_time"  # Include only when using cprofile. Available options: cpu, off_cpu, total_time
        }',
        'LocalPath': '/opt/ml/output/profiler/' # Optional. Local path for profiling outputs
    }
}

To enable Debugger rules for profiling the metrics

The following example code shows how to configure the ProfilerReport rule.

ProfilerRuleConfigurations=[ 
    {
        'RuleConfigurationName': 'ProfilerReport',
        'RuleEvaluatorImage': '895741380848.dkr.ecr.us-west-2.amazonaws.com/sagemaker-debugger-rules:latest',
        'RuleParameters': {
            'rule_to_invoke': 'ProfilerReport',
            'CPUBottleneck_cpu_threshold': '90',
            'IOBottleneck_threshold': '90'
        }
    }
]

To find a complete list of available Docker images for using the Debugger rules, see Use Debugger Docker Images for Built-in or Custom Rules. To find the key-value pairs for RuleParameters, see List of Debugger Built-in Rules.

Update Debugger Profiling Configuration Using the UpdateTrainingJob API Operation

Debugger profiling configuration can be updated while your training job is running by using the update_training_job() function of the Amazon Boto3 SageMaker client. Configure new ProfilerConfig and ProfilerRuleConfiguration objects, and specify the training job name to the TrainingJobName parameter.

ProfilerConfig={ 
    'DisableProfiler': boolean,
    'ProfilingIntervalInMilliseconds': number,
    'ProfilingParameters': { 
        'string' : 'string' 
    }
},
ProfilerRuleConfigurations=[ 
    { 
        'RuleConfigurationName': 'string',
        'RuleEvaluatorImage': 'string',
        'RuleParameters': { 
            'string' : 'string' 
        }
    }
],
TrainingJobName='your-training-job-name-YYYY-MM-DD-HH-MM-SS-SSS'

Add Debugger Custom Rule Configuration to the CreateTrainingJob API Operation

A custom rule can be configured for a training job using the DebugHookConfig and DebugRuleConfiguration objects using the Amazon Boto3 SageMaker client's create_training_job() function. The following code sample shows how to configure a custom ImproperActivation rule written with the smdebug library using this SageMaker API operation. This example assumes that you’ve written the custom rule in custom_rules.py file and uploaded it to an Amazon S3 bucket. The example provides pre-built Docker images that you can use to run your custom rules. These are listed at Amazon SageMaker Debugger Registry URLs for Custom Rule Evaluators. You specify the URL registry address for the pre-built Docker image in the RuleEvaluatorImage parameter.

DebugHookConfig={
    'S3OutputPath': 's3://<default-bucket>/<training-job-name>/debug-output',
    'CollectionConfigurations': [
        {
            'CollectionName': 'relu_activations',
            'CollectionParameters': {
                'include_regex': 'relu',
                'save_interval': '500',
                'end_step': '5000'
            }
        }
    ]
},
DebugRulesConfigurations=[
    {
        'RuleConfigurationName': 'improper_activation_job',
        'RuleEvaluatorImage': '552407032007.dkr.ecr.ap-south-1.amazonaws.com/sagemaker-debugger-rule-evaluator:latest',
        'InstanceType': 'ml.c4.xlarge',
        'VolumeSizeInGB': 400,
        'RuleParameters': {
           'source_s3_uri': 's3://bucket/custom_rules.py',
           'rule_to_invoke': 'ImproperActivation',
           'collection_names': 'relu_activations'
        }
    }
]

To find a complete list of available Docker images for using the Debugger rules, see Use Debugger Docker Images for Built-in or Custom Rules. To find the key-value pairs for RuleParameters, see List of Debugger Built-in Rules.